Index

_

__check_observation_type() (Observation method) __delete__() (AuxilaryInfoDesc method) (FlagDesc method) (MeasurementDesc method) (UnitDesc method) __do_observations() (Observation method) __get__() (AuxilaryInfoDesc method) (FlagDesc method) (MeasurementDesc method) (UnitDesc method) __get_observatory_name() (Observation method) __set__() (AuxilaryInfoDesc method) (FlagDesc method) (MeasurementDesc method) (UnitDesc method) __valid_observation_type (Observation property) __valid_observatories (Observation property) _create_mask_from_dq() (HSTWFC3 method) _define_band_limits() (in module cascade.exoplanet_tools.exoplanet_tools) (in module cascade.spectral_extraction.spectral_extraction) (in module cascade.TSO.TSO) (in module cascade.utilities.utilities) _define_convolution_kernel() (GenericSpectrograph method) (HSTWFC3 method) (SpitzerIRS method) _define_covariance_matrix() (in module cascade.spectral_extraction.spectral_extraction) _define_rebin_weights() (in module cascade.exoplanet_tools.exoplanet_tools) (in module cascade.spectral_extraction.spectral_extraction) (in module cascade.TSO.TSO) (in module cascade.utilities.utilities)

_define_region_of_interest() (GenericSpectrograph method) (HSTWFC3 method) (SpitzerIRS method) _derotate_image() (in module cascade.spectral_extraction.spectral_extraction) _determine_position_offset() (HSTWFC3 method) _determine_relative_rotation_and_scale() (in module cascade.spectral_extraction.spectral_extraction) _determine_relative_source_shift() (in module cascade.spectral_extraction.spectral_extraction) _determine_scan_offset() (HSTWFC3 method) _determine_source_position_from_cal_image() (HSTWFC3 method) _fit_background() (HSTWFC3 method) _get_background_cal_data() (HSTWFC3 method) _get_cube_cal_type() (HSTWFC3 static method) _get_order_mask() (SpitzerIRS method) _get_subarray_size() (HSTWFC3 method) _get_wavelength_calibration() (HSTWFC3 method) (SpitzerIRS method) _is_sparse_sequence() (HSTWFC3 static method) _linear_polar_mapping() (in module cascade.spectral_extraction.spectral_extraction) _log_polar_mapping() (in module cascade.spectral_extraction.spectral_extraction) _pad_region_of_interest_to_square() (in module cascade.spectral_extraction.spectral_extraction) _pad_to_size() (in module cascade.spectral_extraction.spectral_extraction) _read_grism_configuration_files() (HSTWFC3 method) _read_reference_pixel_file() (HSTWFC3 method) _rebin_spectra() (in module cascade.exoplanet_tools.exoplanet_tools) (in module cascade.spectral_extraction.spectral_extraction) (in module cascade.TSO.TSO) (in module cascade.utilities.utilities) _search_ref_pixel_cal_file() (HSTWFC3 static method) _Singleton (class in cascade.initialize.initialize) _WFC3Dispersion() (HSTWFC3 static method) _WFC3Trace() (HSTWFC3 static method)

A

add_auxilary() (SpectralData method) add_fit_parameters_to_parameter_server() (regressionControler method) add_flag() (SpectralData method)

add_measurement() (SpectralData method) add_new_parameters() (regressionParameterServer method) async_update_loop() (regressionWorker method) AuxilaryInfoDesc (class in cascade.data_model.data_model)

B

batman_model (class in cascade.exoplanet_tools.exoplanet_tools)

C

calculate_correction_matrix() (regressionControler static method) calculate_dilution_correcetion() (DilutionCorrection method) calibrate_timeseries() (TSOSuite method) calibrate_timeseries_verbose() (in module cascade.verbose.verbose) cascade.build_archive.build_archive module cascade.cpm_model.cpm_model module cascade.data_model.data_model module cascade.exoplanet_tools.exoplanet_tools module cascade.initialize.initialize module cascade.instruments.Generic.Generic module cascade.instruments.HST.HST module cascade.instruments.InstrumentsBaseClasses module cascade.instruments.ObservationGenerator module cascade.instruments.Spitzer.Spitzer module cascade.spectral_extraction.spectral_extraction module cascade.TSO.TSO module cascade.utilities.utilities module cascade.verbose.verbose module cascade_configuration (in module cascade.initialize.initialize) cascade_default_anaconda_environment (in module cascade.initialize.initialize) cascade_default_data_path (in module cascade.initialize.initialize) cascade_default_initialization_path (in module cascade.initialize.initialize) cascade_default_log_path (in module cascade.initialize.initialize)

cascade_default_path (in module cascade.initialize.initialize) cascade_default_run_scripts_path (in module cascade.initialize.initialize) cascade_default_save_path (in module cascade.initialize.initialize) cascade_default_scripts_path (in module cascade.initialize.initialize) cascade_warnings (in module cascade.initialize.initialize) check_causality() (in module cascade.cpm_model.cpm_model) check_for_exceptions() (in module cascade.build_archive.build_archive) check_wavelength_solution() (TSOSuite method) check_wavelength_solution_verbose() (in module cascade.verbose.verbose) chunk_iterators() (regressionControler method) chunks() (regressionWorker static method) collecting_area (Generic property) (HST property) (Spitzer property) combine_observations() (in module cascade.TSO.TSO) combine_scan_samples() (in module cascade.spectral_extraction.spectral_extraction) combine_spectra() (in module cascade.exoplanet_tools.exoplanet_tools) combine_timeseries() (in module cascade.TSO.TSO) compressDataset() (in module cascade.spectral_extraction.spectral_extraction) compressROI() (in module cascade.spectral_extraction.spectral_extraction) compressSpectralTrace() (in module cascade.spectral_extraction.spectral_extraction) compute_model() (regressionWorker method) configurator (class in cascade.initialize.initialize) convert_object_value_strings_to_values() (in module cascade.build_archive.build_archive) convert_spectrum_to_brighness_temperature() (in module cascade.exoplanet_tools.exoplanet_tools) correct_initial_wavelength_shift() (in module cascade.spectral_extraction.spectral_extraction) correct_wavelength_for_source_movent() (in module cascade.spectral_extraction.spectral_extraction) correct_wavelengths() (TSOSuite method) correct_wavelengths_verbose() (in module cascade.verbose.verbose) create_bash_script() (in module cascade.build_archive.build_archive) create_cleaned_dataset() (in module cascade.spectral_extraction.spectral_extraction) create_configuration() (in module cascade.build_archive.build_archive) create_edge_mask() (in module cascade.spectral_extraction.spectral_extraction) create_extraction_profile() (in module cascade.spectral_extraction.spectral_extraction) create_parser() (IniFileParser method) create_regularization_matrix() (in module cascade.cpm_model.cpm_model) create_unique_ids() (in module cascade.build_archive.build_archive)

D

data (SpectralData property) data_unit (SpectralData property) define_batman_model() (batman_model static method) define_exotethys_model() (exotethys_model static method) define_image_regions_to_be_filtered() (in module cascade.spectral_extraction.spectral_extraction) define_stellar_model() (exotethys_stellar_model static method) determine_absolute_cross_dispersion_position() (in module cascade.spectral_extraction.spectral_extraction)

determine_center_of_light_posision() (in module cascade.spectral_extraction.spectral_extraction) determine_optimal_filter() (in module cascade.spectral_extraction.spectral_extraction) determine_relative_source_position() (in module cascade.spectral_extraction.spectral_extraction) determine_source_movement() (TSOSuite method) determine_source_movement_verbose() (in module cascade.verbose.verbose) determine_wavelength_shift() (SpectralModel method) DilutionCorrection (class in cascade.exoplanet_tools.exoplanet_tools) directional_filters() (in module cascade.spectral_extraction.spectral_extraction)

E

eclipse_to_transit() (in module cascade.exoplanet_tools.exoplanet_tools) equilibrium_temperature() (in module cascade.exoplanet_tools.exoplanet_tools) execute() (TSOSuite method) (Verbose method) exotethys_model (class in cascade.exoplanet_tools.exoplanet_tools)

exotethys_stellar_model (class in cascade.exoplanet_tools.exoplanet_tools) extract_1d_spectra() (TSOSuite method) extract_1d_spectra_verbose() (in module cascade.verbose.verbose) extract_exoplanet_data() (in module cascade.exoplanet_tools.exoplanet_tools) extract_spectrum() (in module cascade.spectral_extraction.spectral_extraction)

F

fill_config_parameters() (in module cascade.build_archive.build_archive) fill_system_parameters() (in module cascade.build_archive.build_archive) filter_dataset() (TSOSuite method)

filter_dataset_verbose() (in module cascade.verbose.verbose) filter_image_cube() (in module cascade.spectral_extraction.spectral_extraction) find() (in module cascade.utilities.utilities) FlagDesc (class in cascade.data_model.data_model)

G

generate_default_initialization() (in module cascade.initialize.initialize) Generic (class in cascade.instruments.Generic.Generic) GenericSpectrograph (class in cascade.instruments.Generic.Generic) get_all_regression_data() (regressionDataServer method) get_calalog() (in module cascade.exoplanet_tools.exoplanet_tools) get_configuration() (regressionParameterServer method) get_control_parameters() (regressionControler method) get_data_chunck() (regressionWorker static method) get_data_from_fits() (in module cascade.utilities.utilities) get_data_info() (regressionDataServer method) get_data_parameters() (regressionParameterServer method) get_detector_cubes() (SpitzerIRS method) get_fit_parameters_from_server() (regressionControler method) get_fitted_parameters() (regressionParameterServer method) get_instrument_setup() (GenericSpectrograph method) (HSTWFC3 method) (InstrumentBase method) (SpitzerIRS method) get_lightcurve_model() (regressionControler method) (regressionDataServer method)

get_processed_parameters() (regressionParameterServer method) get_processed_parameters_from_server() (regressionControler method) get_regression_data() (regressionDataServer method) get_regression_data_chunk() (regressionDataServer method) (regressionWorker static method) get_regression_iterators() (regressionControler method) get_regression_parameters() (regressionParameterServer method) (regressionWorker static method) get_regularization() (regressionParameterServer method) get_regularization_parameters_from_server() (regressionControler method) get_spectra() (GenericSpectrograph method) (HSTWFC3 method) (SpitzerIRS method) get_spectral_cubes() (HSTWFC3 method) get_spectral_images() (HSTWFC3 method) (SpitzerIRS method) get_spectral_trace() (GenericSpectrograph method) (HSTWFC3 method) (SpitzerIRS method) get_spot_parameters() (spotprofile static method) grouper_it() (regressionControler static method)

H

highpass() (in module cascade.spectral_extraction.spectral_extraction)

HST (class in cascade.instruments.HST.HST) HSTWFC3 (class in cascade.instruments.HST.HST)

I

IniFileParser (class in cascade.build_archive.build_archive) initialize_cascade() (in module cascade.initialize.initialize) initialize_data_server() (regressionDataServer method) initialize_parameter_server() (regressionParameterServer method) initialize_parameters() (regressionParameterServer method) initialize_regression_configuration() (regressionParameterServer method) initialize_regression_iterators() (regressionControler method) initialize_regularization() (regressionParameterServer method) initialize_servers() (regressionControler method)

initialize_tso() (TSOSuite method) initialze_lightcurve_model() (regressionDataServer method) InstanceDescriptorMixin (class in cascade.data_model.data_model) instantiate_data_server() (regressionControler method) instantiate_parameter_server() (regressionControler method) InstrumentBase (class in cascade.instruments.InstrumentsBaseClasses) interpolated_dc_model() (DilutionCorrection method) interpolated_lc_model() (lightcurve method) isInitialized (configurator attribute) iterative_bad_pixel_flagging() (in module cascade.spectral_extraction.spectral_extraction)

J

jy_to_kmag() (in module cascade.exoplanet_tools.exoplanet_tools)

K

Kmag (in module cascade.exoplanet_tools.exoplanet_tools)

kmag_to_jy() (in module cascade.exoplanet_tools.exoplanet_tools)

L

lightcurve (class in cascade.exoplanet_tools.exoplanet_tools) limbdarkning (class in cascade.exoplanet_tools.exoplanet_tools) load_data() (GenericSpectrograph method) (HSTWFC3 method) (InstrumentBase method) (SpitzerIRS method) (TSOSuite method)

load_data_verbose() (in module cascade.verbose.verbose) location (Generic property) (HST property) (ObservatoryBase property) (Spitzer property) log_likelihood() (in module cascade.cpm_model.cpm_model) long_substr() (in module cascade.build_archive.build_archive)

M

make_bootstrap_samples() (in module cascade.cpm_model.cpm_model) mask (SpectralData property) masked_array_input() (in module cascade.exoplanet_tools.exoplanet_tools) MeasurementDesc (class in cascade.data_model.data_model) modified_AIC() (in module cascade.cpm_model.cpm_model) module cascade.build_archive.build_archive cascade.cpm_model.cpm_model cascade.data_model.data_model cascade.exoplanet_tools.exoplanet_tools cascade.initialize.initialize cascade.instruments.Generic.Generic cascade.instruments.HST.HST cascade.instruments.InstrumentsBaseClasses cascade.instruments.ObservationGenerator cascade.instruments.Spitzer.Spitzer cascade.spectral_extraction.spectral_extraction cascade.TSO.TSO cascade.utilities.utilities cascade.verbose.verbose

N

NAIF_ID (Generic property) (HST property) (ObservatoryBase property) (Spitzer property) name (Generic property) (GenericSpectrograph property) (HST property) (HSTWFC3 property) (InstrumentBase property) (ObservatoryBase property) (Spitzer property) (SpitzerIRS property)

O

Observation (class in cascade.instruments.ObservationGenerator) observatory_instruments (Generic property) (HST property) (ObservatoryBase property) (Spitzer property)

ObservatoryBase (class in cascade.instruments.InstrumentsBaseClasses) ols() (in module cascade.cpm_model.cpm_model)

P

parse_database() (in module cascade.exoplanet_tools.exoplanet_tools) planck() (in module cascade.exoplanet_tools.exoplanet_tools) post_process_regression_fit() (regressionControler method)

print_parser() (IniFileParser method) print_parser_content() (in module cascade.build_archive.build_archive) process_regression_fit() (regressionControler method)

R

read_config_file() (in module cascade.build_archive.build_archive) read_dataset_from_fits() (in module cascade.utilities.utilities) read_ini_files() (in module cascade.initialize.initialize) rebin_to_common_wavelength_grid() (in module cascade.spectral_extraction.spectral_extraction) register_telescope_movement() (in module cascade.spectral_extraction.spectral_extraction) regressionControler (class in cascade.cpm_model.cpm_model) regressionDataServer (class in cascade.cpm_model.cpm_model) regressionParameterServer (class in cascade.cpm_model.cpm_model) regressionWorker (class in cascade.cpm_model.cpm_model) remove_duplicate() (in module cascade.build_archive.build_archive) remove_space() (in module cascade.build_archive.build_archive) renormalize_spatial_scans() (in module cascade.spectral_extraction.spectral_extraction) reset() (configurator method) reset_fit_parameters() (regressionControler method) reset_parameter_server() (regressionParameterServer method) reset_parameters() (regressionParameterServer method) reset_tso() (TSOSuite method) return_all_hst_planets() (in module cascade.build_archive.build_archive) return_constant_limbdarkning_from_ini() (limbdarkning method) return_design_matrix() (in module cascade.cpm_model.cpm_model)

return_eclips_coefficients() (limbdarkning static method) return_exoplanet_catalogs() (in module cascade.build_archive.build_archive) return_header_info() (in module cascade.build_archive.build_archive) return_hst_data_calalog_keys() (in module cascade.build_archive.build_archive) return_lambda_grid() (in module cascade.cpm_model.cpm_model) return_masked_array() (SpectralData method) (SpectralDataTimeSeries method) return_mid_transit() (lightcurve method) return_par() (DilutionCorrection method) (limbdarkning method) (SpectralModel method) return_par_from_db() (batman_model method) (exotethys_model method) (exotethys_stellar_model method) return_par_from_ini() (batman_model method) (exotethys_model method) (exotethys_stellar_model method) return_parser() (IniFileParser method) return_spot_profile() (spotprofile method) ridge() (in module cascade.cpm_model.cpm_model) run_regression_model() (regressionControler method)

S

save_observations() (in module cascade.build_archive.build_archive) save_parser() (IniFileParser method) save_results() (TSOSuite method) scale_height() (in module cascade.exoplanet_tools.exoplanet_tools) select_data() (regressionDataServer static method) select_regressors() (in module cascade.cpm_model.cpm_model) (regressionDataServer static method) set_extraction_mask() (TSOSuite method) set_extraction_mask_verbose() (in module cascade.verbose.verbose) setup_cascade_data() (in module cascade.initialize.initialize) setup_regression_data() (regressionDataServer method) setup_regression_matrix() (regressionDataServer method) sigma_clip_data() (in module cascade.spectral_extraction.spectral_extraction)

sigma_clip_data_cosmic() (in module cascade.spectral_extraction.spectral_extraction) SpectralData (class in cascade.data_model.data_model) SpectralDataTimeSeries (class in cascade.data_model.data_model) SpectralModel (class in cascade.exoplanet_tools.exoplanet_tools) spectres() (in module cascade.utilities.utilities) Spitzer (class in cascade.instruments.Spitzer.Spitzer) SpitzerIRS (class in cascade.instruments.Spitzer.Spitzer) spotprofile (class in cascade.exoplanet_tools.exoplanet_tools) subtract_background() (TSOSuite method) subtract_background_verbose() (in module cascade.verbose.verbose) surface_gravity() (in module cascade.exoplanet_tools.exoplanet_tools) sync_with_data_server() (regressionParameterServer method) sync_with_parameter_server() (regressionDataServer method)

T

time (SpectralDataTimeSeries property) time_unit (SpectralDataTimeSeries property)

transit_depth() (in module cascade.exoplanet_tools.exoplanet_tools) transit_to_eclipse() (in module cascade.exoplanet_tools.exoplanet_tools) TSOSuite (class in cascade.TSO.TSO)

U

uncertainty (SpectralData property) UnitDesc (class in cascade.data_model.data_model) unpack_datasets() (regressionDataServer method) unpack_fit_dataset() (regressionDataServer method) unpack_regressor_dataset() (regressionDataServer method)

update_fitted_parameters() (regressionParameterServer method) update_initial_parameters() (regressionWorker method) update_optimal_regulatization() (regressionParameterServer method) update_parameters_on_server() (regressionWorker method) update_processed_parameters() (regressionParameterServer method)

V

Verbose (class in cascade.verbose.verbose)

Vmag (in module cascade.exoplanet_tools.exoplanet_tools)

W

warp_polar() (in module cascade.spectral_extraction.spectral_extraction) wavelength (SpectralData property) wavelength_unit (SpectralData property)

write_dataset_to_fits() (in module cascade.utilities.utilities) write_spectra_to_fits() (in module cascade.utilities.utilities) write_timeseries_to_fits() (in module cascade.utilities.utilities)