CASCADe API

• The cascade.TSO module
  • TSOSuite
    • TSOSuite.execute()
    • TSOSuite.initialize_tso()
    • TSOSuite.reset_tso()
    • TSOSuite.load_data()
    • TSOSuite.subtract_background()
    • TSOSuite.filter_dataset()
    • TSOSuite.determine_source_movement()
    • TSOSuite.correct_wavelengths()
    • TSOSuite.set_extraction_mask()
    • TSOSuite.check_wavelength_solution()
    • TSOSuite.extract_1d_spectra()
    • TSOSuite.calibrate_timeseries()
    • TSOSuite.save_results()
  • combine_observations()
  • combine_timeseries()
  • _define_band_limits()
  • _define_rebin_weights()
  • _rebin_spectra()
• The cascade.cpm_model module
  • ols()
  • check_causality()
  • select_regressors()
  • return_design_matrix()
  • log_likelihood()
  • modified_AIC()
  • create_regularization_matrix()
  • return_lambda_grid()
  • regressionDataServer
    • regressionDataServer.sync_with_parameter_server()
    • regressionDataServer.get_data_info()
    • regressionDataServer.initialze_lightcurve_model()
    • regressionDataServer.get_lightcurve_model()
    • regressionDataServer.unpack_datasets()
    • regressionDataServer.unpack_regressor_dataset()
    • regressionDataServer.unpack_fit_dataset()
    • regressionDataServer.select_regressors()
    • regressionDataServer.select_data()
    • regressionDataServer.setup_regression_data()
    • regressionDataServer.setup_regression_matrix()
    • regressionDataServer.get_regression_data()
    • regressionDataServer.get_all_regression_data()
    • regressionDataServer.get_regression_data_chunk()
    • regressionDataServer.initialize_data_server()
  • regressionControler
    • regressionControler.instantiate_parameter_server()
    • regressionControler.instantiate_data_server()
    • regressionControler.initialize_servers()
    • regressionControler.get_fit_parameters_from_server()
    • regressionControler.get_processed_parameters_from_server()
    • regressionControler.get_regularization_parameters_from_server()
    • regressionControler.get_control_parameters()
    • regressionControler.get_lightcurve_model()
    • regressionControler.initialize_regression_iterators()
    • regressionControler.get_regression_iterators()
    • regressionControler.grouper_it()
    • regressionControler.chunk_iterators()
    • regressionControler.reset_fit_parameters()
    • regressionControler.add_fit_parameters_to_parameter_server()
    • regressionControler.run_regression_model()
    • regressionControler.calculate_correction_matrix()
    • regressionControler.process_regression_fit()
    • regressionControler.post_process_regression_fit()
  • ridge()
  • make_bootstrap_samples()
  • regressionParameterServer
    • regressionParameterServer.initialize_regression_configuration()
    • regressionParameterServer.get_regression_parameters()
    • regressionParameterServer.get_configuration()
    • regressionParameterServer.sync_with_data_server()
    • regressionParameterServer.get_data_parameters()
    • regressionParameterServer.initialize_regularization()
    • regressionParameterServer.get_regularization()
    • regressionParameterServer.update_optimal_regulatization()
    • regressionParameterServer.initialize_parameters()
    • regressionParameterServer.update_fitted_parameters()
    • regressionParameterServer.update_processed_parameters()
    • regressionParameterServer.get_fitted_parameters()
    • regressionParameterServer.get_processed_parameters()
    • regressionParameterServer.add_new_parameters()
    • regressionParameterServer.reset_parameters()
    • regressionParameterServer.initialize_parameter_server()
    • regressionParameterServer.reset_parameter_server()
  • regressionWorker
    • regressionWorker.update_initial_parameters()
    • regressionWorker.compute_model()
    • regressionWorker.get_data_chunck()
    • regressionWorker.get_regression_data_chunk()
    • regressionWorker.get_regression_parameters()
    • regressionWorker.update_parameters_on_server()
    • regressionWorker.chunks()
    • regressionWorker.async_update_loop()
• The cascade.build_archive module
  • read_config_file()
  • remove_space()
  • remove_duplicate()
  • fill_system_parameters()
  • long_substr()
  • return_exoplanet_catalogs()
  • create_configuration()
  • print_parser_content()
  • return_hst_data_calalog_keys()
  • return_all_hst_planets()
  • return_header_info()
  • create_bash_script()
  • save_observations()
  • fill_config_parameters()
  • IniFileParser
    • IniFileParser.create_parser()
    • IniFileParser.return_parser()
    • IniFileParser.print_parser()
    • IniFileParser.save_parser()
  • check_for_exceptions()
  • convert_object_value_strings_to_values()
  • create_unique_ids()
• The cascade.data_model module
  • InstanceDescriptorMixin
  • UnitDesc
    • UnitDesc.__get__()
    • UnitDesc.__set__()
    • UnitDesc.__delete__()
  • FlagDesc
    • FlagDesc.__get__()
    • FlagDesc.__set__()
    • FlagDesc.__delete__()
  • AuxilaryInfoDesc
    • AuxilaryInfoDesc.__get__()
    • AuxilaryInfoDesc.__set__()
    • AuxilaryInfoDesc.__delete__()
  • MeasurementDesc
    • MeasurementDesc.__get__()
    • MeasurementDesc.__set__()
    • MeasurementDesc.__delete__()
  • SpectralData
    • SpectralData.wavelength
    • SpectralData.wavelength_unit
    • SpectralData.data
    • SpectralData.uncertainty
    • SpectralData.data_unit
    • SpectralData.mask
    • SpectralData.return_masked_array()
    • SpectralData.add_measurement()
    • SpectralData.add_flag()
    • SpectralData.add_auxilary()
  • SpectralDataTimeSeries
    • SpectralDataTimeSeries.time
    • SpectralDataTimeSeries.time_unit
    • SpectralDataTimeSeries.return_masked_array()
• The cascade.exoplanet_tools module
  • Vmag
  • Kmag
  • kmag_to_jy()
  • jy_to_kmag()
  • surface_gravity()
  • scale_height()
  • transit_depth()
  • planck()
  • equilibrium_temperature()
  • get_calalog()
  • parse_database()
  • convert_spectrum_to_brighness_temperature()
  • combine_spectra()
  • extract_exoplanet_data()
  • lightcurve
    • lightcurve.interpolated_lc_model()
    • lightcurve.return_mid_transit()
  • batman_model
    • batman_model.define_batman_model()
    • batman_model.return_par_from_ini()
    • batman_model.return_par_from_db()
  • masked_array_input()
  • eclipse_to_transit()
  • transit_to_eclipse()
  • exotethys_model
    • exotethys_model.define_exotethys_model()
    • exotethys_model.return_par_from_ini()
    • exotethys_model.return_par_from_db()
  • limbdarkning
    • limbdarkning.return_par()
    • limbdarkning.return_eclips_coefficients()
    • limbdarkning.return_constant_limbdarkning_from_ini()
  • exotethys_stellar_model
    • exotethys_stellar_model.define_stellar_model()
    • exotethys_stellar_model.return_par_from_ini()
    • exotethys_stellar_model.return_par_from_db()
  • SpectralModel
    • SpectralModel.return_par()
    • SpectralModel.determine_wavelength_shift()
  • DilutionCorrection
    • DilutionCorrection.return_par()
    • DilutionCorrection.calculate_dilution_correcetion()
    • DilutionCorrection.interpolated_dc_model()
  • spotprofile
    • spotprofile.get_spot_parameters()
    • spotprofile.return_spot_profile()
  • _define_band_limits()
  • _define_rebin_weights()
  • _rebin_spectra()
• The cascade.initialize module
  • cascade_warnings
  • cascade_default_path
  • cascade_default_data_path
  • cascade_default_save_path
  • cascade_default_initialization_path
  • cascade_default_scripts_path
  • cascade_default_log_path
  • generate_default_initialization()
  • cascade_default_run_scripts_path
  • cascade_default_anaconda_environment
  • configurator
    • configurator.isInitialized
    • configurator.reset()
  • cascade_configuration
  • setup_cascade_data()
  • initialize_cascade()
  • read_ini_files()
  • _Singleton
• The cascade.instruments module
  • Observation
    • Observation.__valid_observatories
    • Observation.__valid_observation_type
    • Observation.__do_observations()
    • Observation.__get_observatory_name()
    • Observation.__check_observation_type()
  • ObservatoryBase
    • ObservatoryBase.name
    • ObservatoryBase.location
    • ObservatoryBase.NAIF_ID
    • ObservatoryBase.observatory_instruments
  • InstrumentBase
    • InstrumentBase.load_data()
    • InstrumentBase.get_instrument_setup()
    • InstrumentBase.name
  • HST
    • HST.name
    • HST.location
    • HST.collecting_area
    • HST.NAIF_ID
    • HST.observatory_instruments
  • HSTWFC3
    • HSTWFC3.name
    • HSTWFC3.load_data()
    • HSTWFC3.get_instrument_setup()
    • HSTWFC3.get_spectra()
    • HSTWFC3.get_spectral_images()
    • HSTWFC3.get_spectral_cubes()
    • HSTWFC3._create_mask_from_dq()
    • HSTWFC3._determine_position_offset()
    • HSTWFC3._determine_scan_offset()
    • HSTWFC3._get_cube_cal_type()
    • HSTWFC3._is_sparse_sequence()
    • HSTWFC3._define_convolution_kernel()
    • HSTWFC3._define_region_of_interest()
    • HSTWFC3._get_background_cal_data()
    • HSTWFC3._fit_background()
    • HSTWFC3._determine_source_position_from_cal_image()
    • HSTWFC3._read_grism_configuration_files()
    • HSTWFC3._read_reference_pixel_file()
    • HSTWFC3._search_ref_pixel_cal_file()
    • HSTWFC3._get_subarray_size()
    • HSTWFC3._get_wavelength_calibration()
    • HSTWFC3.get_spectral_trace()
    • HSTWFC3._WFC3Trace()
    • HSTWFC3._WFC3Dispersion()
  • Spitzer
    • Spitzer.name
    • Spitzer.location
    • Spitzer.collecting_area
    • Spitzer.NAIF_ID
    • Spitzer.observatory_instruments
  • SpitzerIRS
    • SpitzerIRS.name
    • SpitzerIRS.load_data()
    • SpitzerIRS.get_instrument_setup()
    • SpitzerIRS.get_spectra()
    • SpitzerIRS.get_spectral_images()
    • SpitzerIRS._define_convolution_kernel()
    • SpitzerIRS._define_region_of_interest()
    • SpitzerIRS._get_order_mask()
    • SpitzerIRS._get_wavelength_calibration()
    • SpitzerIRS.get_detector_cubes()
    • SpitzerIRS.get_spectral_trace()
  • Generic
    • Generic.name
    • Generic.location
    • Generic.collecting_area
    • Generic.NAIF_ID
    • Generic.observatory_instruments
  • GenericSpectrograph
    • GenericSpectrograph.name
    • GenericSpectrograph.load_data()
    • GenericSpectrograph.get_instrument_setup()
    • GenericSpectrograph.get_spectra()
    • GenericSpectrograph._define_convolution_kernel()
    • GenericSpectrograph._define_region_of_interest()
    • GenericSpectrograph.get_spectral_trace()
• The cascade.spectral_extraction module
  • directional_filters()
  • create_edge_mask()
  • determine_optimal_filter()
  • define_image_regions_to_be_filtered()
  • filter_image_cube()
  • iterative_bad_pixel_flagging()
  • extract_spectrum()
  • create_extraction_profile()
  • determine_relative_source_position()
  • warp_polar()
  • highpass()
  • _log_polar_mapping()
  • _determine_relative_source_shift()
  • register_telescope_movement()
  • _determine_relative_rotation_and_scale()
  • _derotate_image()
  • _pad_to_size()
  • _pad_region_of_interest_to_square()
  • correct_wavelength_for_source_movent()
  • rebin_to_common_wavelength_grid()
  • determine_center_of_light_posision()
  • determine_absolute_cross_dispersion_position()
  • combine_scan_samples()
  • sigma_clip_data()
  • sigma_clip_data_cosmic()
  • create_cleaned_dataset()
  • compressROI()
  • compressSpectralTrace()
  • compressDataset()
  • correct_initial_wavelength_shift()
  • renormalize_spatial_scans()
  • _define_band_limits()
  • _define_covariance_matrix()
  • _define_rebin_weights()
  • _linear_polar_mapping()
  • _rebin_spectra()
• The cascade.utilities module
  • write_timeseries_to_fits()
  • find()
  • get_data_from_fits()
  • spectres()
  • write_spectra_to_fits()
  • _define_band_limits()
  • _define_rebin_weights()
  • _rebin_spectra()
  • write_dataset_to_fits()
  • read_dataset_from_fits()
• The cascade.verbose module
  • load_data_verbose()
  • subtract_background_verbose()
  • filter_dataset_verbose()
  • determine_source_movement_verbose()
  • check_wavelength_solution_verbose()
  • correct_wavelengths_verbose()
  • set_extraction_mask_verbose()
  • extract_1d_spectra_verbose()
  • calibrate_timeseries_verbose()
  • Verbose
    • Verbose.execute()